Guide · End to endUpdated October 6, 2026

How to run a clinical trial from scratch: the 12-step checklist

One page that takes you from research question to close-out, in the order the work actually happens. Each step says what to produce, what usually goes wrong, and where software helps.

  • 12 steps in order
  • Ethics to close-out
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Describe it

Plain-language summary

Phase 1 template

8 visits, ready to edit

Starter schedule · editable
  1. D-28Screening
  2. D-1Admission
  3. D1Dosing
  4. D3Discharge
  5. D8Follow-up
  6. D15Follow-up
  7. D29End of study

The 12 steps at a glance

  • Plan: question, design, protocol, budget and team (steps 1 to 4).
  • Approve: ethics or IRB, regulatory route and registration (steps 5 and 6).
  • Build: data capture, consent, training and a dry run (steps 7 to 9).
  • Run: enrol, monitor and clean data (steps 10 and 11).
  • Close: lock the database, analyse, report and archive (step 12).
  • This is a practical overview, not legal or regulatory advice. Rules differ by country, product type and trial type.

Orientation

Before the checklist: what running a trial involves

A clinical trial is a planned study in people that tests a question under a written protocol. The work is the same shape whether the trial is a university pilot or a pivotal study: decide what you are testing, write it down, get independent approval, recruit and consent participants, collect data in a controlled way, and analyse it honestly. The international standard for how this should be done is ICH Good Clinical Practice, which emphasises participant protection and reliable data. Capture states its alignment with ICH-GCP E6(R2) and does not claim E6(R3) compliance.

If you are choosing between doing the work yourself and hiring a contract research organisation, see how to run a clinical trial without a CRO and how to run a clinical trial with a small team. For the list of tools involved, see tools needed to run a clinical trial. This page is the sequence that ties them together.

Phase A: plan

Steps 1 to 4: plan the study

  1. 1

    1. Define the question and the primary endpoint

    State the population, the intervention or exposure, the comparison and the one outcome that will decide the study. Everything else, including sample size and visit schedule, follows from it.

  2. 2

    2. Choose the design

    Randomized or single-arm, blinded or open, parallel or crossover, and how long. Estimate sample size with realistic dropout using a sample size calculator. If you are unsure, a pilot study can test feasibility first.

  3. 3

    3. Write the protocol and schedule of assessments

    The protocol sets out eligibility, procedures, safety monitoring and analysis. The schedule of assessments lists what happens at every visit. Use the clinical trial protocol template as a structure.

  4. 4

    4. Budget, team and timeline

    Cost drivers are sites, monitoring, data management, and participant visits. Use the timeline calculator and read how much a clinical trial costs. Name who is responsible for each function, even if one person holds several roles.

Phase B: approve

Steps 5 and 6: approvals and registration

  1. 1

    5. Ethics committee or IRB review

    Independent review of the protocol, consent form and recruitment materials is required before enrolling participants in most settings. Prepare the package with the IRB submission checklist. A blank eCRF PDF export from Capture can support the submission.

  2. 2

    6. Regulatory route and registration

    Work out whether your product or device needs a regulatory submission or notification, and whether the trial must be registered. For example, the journal editors' body ICMJE expects trials to be registered in a public registry before enrolment, and in the US, applicable clinical trials must be registered on ClinicalTrials.gov within 21 days of enrolling the first participant. Check the specifics for your trial with your regulator or a regulatory professional; this is not legal advice.

Build and rehearse while approvals are pending

Approval waits are the best time to build the study. Do it in the free sandbox, with no credit card; pay only when you go live.

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Phase C: build

Steps 7 to 9: build the systems and the team

  1. 1

    7. Build data capture

    Create the eCRFs, visits, edit checks and roles. This is where an EDC and the eCRF builder come in. Test everything with sample data. For a hands-on plan see how to set up a clinical trial database in a day.

  2. 2

    8. Prepare consent and participant-facing tools

    Write consent in plain language and decide how it will be collected, on paper or electronically with eConsent. Set up questionnaires or diaries through ePRO if participants report outcomes. See how to write an eConsent form.

  3. 3

    9. Train, document and dry run

    Train site staff, write a data management plan and a monitoring plan, and run a full dry run with test participants. File the approvals and documents in your study file.

Phase D: run and close

Steps 10 to 12: run the trial and close it out

  1. 1

    10. Enrol and follow participants

    Screen against the eligibility criteria, record screen failures, consent before any study procedure, then follow the visit schedule. Track enrolment against target weekly.

  2. 2

    11. Monitor safety and clean the data

    Record adverse events and review serious ones promptly. Resolve queries as they arise rather than at the end, and use risk-based monitoring to focus source checks where they matter. See risk-based monitoring and SDV.

  3. 3

    12. Lock, analyse, report and archive

    When data are clean and queries closed, lock the database so no further change is possible without a documented unlock, then analyse, report and archive. See database lock and the lock and unlock workflow.

In practice

Who does what when the team is small

Academic and early-stage teams often have one person covering several roles. That works if the roles are written down. The principal investigator owns the protocol and medical decisions. A coordinator handles screening, consent and visits. Someone owns data: building forms, reviewing queries and exports. Someone owns safety review. Where one person holds two roles, avoid reviewing your own work: have a colleague check forms you built and queries you raised.

Put the minimum documents in one place from day one: the approved protocol and amendments, ethics approvals, consent versions, a delegation log of who may do what, training records and the data management plan. The delegation log template is a simple start. Keeping this file tidy while the study runs is far easier than reconstructing it at close-out.

Pitfalls

Where first-time teams lose the most time

StepCommon mistakeFix
1 to 3Too many endpoints and visitsCut anything that will not change a decision
5Submitting incomplete documentsUse a submission checklist before sending
7Building forms after approval, then discovering protocol gapsBuild during the approval wait and test against the protocol
10Consent after a study procedureBlock procedures until consent is recorded
11Cleaning data only at the endAuto-queries and weekly review

Software

What you need software for, and what you do not

Data capture and queries

An EDC with an audit trail, edit checks and role-based access.

Consent

Paper or eConsent with version control and signatures.

Participant-reported data

ePRO or diaries if outcomes come from participants.

Randomization

Built-in randomization if you have more than one arm.

Documents and approvals

A study file maintained to your sponsor's procedures.

Not required on day one

Large enterprise suites. Many early studies run on one all-in-one platform; Capture supports Phase 1 to 3.

FAQ

Questions teams ask before they switch

Something not covered here? Ask us directly.

What is the first step to running a clinical trial?

Define the research question and the primary endpoint. Design, sample size, protocol and budget all follow from it.

Can I run a clinical trial without a CRO?

Yes, many sponsor- and site-led studies do. You take on the functions a CRO would perform, so plan who covers data management, monitoring and safety. See the dedicated guide.

When must a trial be registered?

It depends. ICMJE expects registration before enrolment for journal publication, and US applicable trials must register on ClinicalTrials.gov within 21 days of first enrolment. Confirm your obligations with your regulator. This is not legal advice.

How long does it take to start a trial?

It varies widely with ethics review, regulatory steps, contracting and site readiness. Build the study database while approvals run, so it is not on the critical path.

What software do I need?

At minimum, an EDC for data capture with an audit trail. Add eConsent, ePRO and randomization as the protocol requires. Capture combines them.

Can I try the data capture first?

Yes. The free sandbox includes every feature with no credit card, and you pay only when you go live with real participants.

Does Capture support late-phase trials?

Yes. Capture supports Phase 1, 2 and 3 studies.

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